We deposit publicly available code at Github https://github.com/skotheimlab
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An algorithm to robustly detect the timing of gene activation in a timecourse experiment is described in Eser et al 2011 Mol. Cell. Please contact Umut (eser@stanford.edu) for further help with implementation. Click here for download.
We have developed a state-of-the-art algorithm for yeast segmentation and tracking. The algorithm is described in Doncic et al PLoS ONE 2013. Click here to download the relevant MATLAB files for implementation. Contact Andreas for any assistance (doncic@stanford.edu).